Fig. 6
From: Admixture and selection offer insights for the conservation and breeding of Guyuan cattle
Candidate region of BTA11 (95.20–95.37 Mb) in Guyuan cattle with an excess of EAI ancestry. a For the candidate region, the proportions of SNPs with |iHS|≥ 2 and EAI ancestry in Guyuan cattle were calculated in 5 kb windows with a 2 kb step, along with the FST values between Guyuan and Hanwoo or EAI cattle and the Tajimas’ D values in Guyuan and Hanwoo cattle. b Haplotypes in the candidate regions (major alleles shown in orange, minor alleles in blue). c Core SNP of the candidate region in the EHH test. d A SNP in the promoter of the NEK6 gene identified by ATAC_seq and H3K4me3 ChIP_seq in bovine spleen tissues. e Expression of the NEK6 gene identified by RNA-seq in in bovine tissues highly enriched with immune cells