Fig. 2
From: Transcriptomic characterization of transitioning cell types in the skin of Atlantic salmon
Identification and characterization of putative mesenchymal stromal cells. a Uniform manifold approximation and projection (UMAP) plot showing the expression of mammalian MSC markers, such as cd34, in a salmon skin and fin cell atlas. This panel displays expression levels for one cd34 paralogue; for other paralogues and stem markers refer to Additional file 2: Fig. S1a. b UMAP analysis illustrating distinct cell subclusters within the putative MSC-containing population. Each subcluster is colour-coded to represent different sub cell types. c Violin plots showing the expression levels of MSC markers across the various subclusters of the putative MSC populations. Each colour corresponds to one of the six samples analysed, ordered from left to right: fin1, fin2, skin1, fin3, fin4 and skin2. d Heatmap of the top 5 differentially expressed genes for each cellular subcluster, compared against the background of all other cell types. See Additional file 1: Table. S6 for the full list of marker genes