Fig. 1
The mapping and genotyping performance of different genomes. A The ratio of mapped reads in the graph space (x-axis) and in the linear space (y-axis). B The accuracy of all mappings, high-quality mappings (mapping quality > 30), and mappings in repeat regions. C The ration of different mapping bias. The mapping bias was classified into three types: false-positive mappings, false-negative mappings, and erroneous mappings. D Genotyping accuracy of SNPs (left panel) and short INDELs (right panel)