Table 2 Differential expression between homozygous resistant (RR) and homozygous susceptible (SS) European sea bass fish based on the major VNN resistance QTL genotype
Tissue | Condition | GeneID | FDR p-value | Log2 FC |
|---|---|---|---|---|
Brain | Mock | LGALS8 | 1 | - |
LOC127358630 | 2.49E − 23 | 1.21 | ||
LOC127358685 | 0.99 | - | ||
ENSDLAG0005026832 | 1 | - | ||
LOC127358678 | 1 | - | ||
LOC127358638 | 1 | - | ||
VNN | LGALS8 | 0.86 | - | |
LOC127358630 | 0.97 | - | ||
LOC127358685 | 0.13 | - | ||
ENSDLAG0005026832 | 0.56 | - | ||
LOC127358678 | 0.49 | - | ||
LOC127358638 | 0.72 | - | ||
Head kidney | Mock | LGALS8 | 1 | - |
LOC127358630 | 0.02 | 1.00 | ||
LOC127358685 | 0.02 | 1.36 | ||
ENSDLAG0005026832 | 8.27E − 05 | 0.66 | ||
LOC127358678 | 1 | - | ||
LOC127358638 | 1 | - | ||
VNN | LGALS8 | 0.97 | - | |
LOC127358630 | 0.97 | - | ||
LOC127358685 | 8.07E − 06 | 0.91 | ||
ENSDLAG0005026832 | 2.85E − 11 | 0.70 | ||
LOC127358678 | 0.99 | - | ||
LOC127358638 | 0.90 | - |