Table 2 GO term enrichment among all genes upregulated after 1 h in water. GO enrichment carried out using tools in FungiDB [30]. Threshold for inclusion in table P < 0.02
From: Long-term survival of asexual Zymoseptoria tritici spores in the environment
GO ID | GO Term | Genes in background with this term | Genes up-regulated at 1 h | Fold enrichment | Odds ratio | P-value | Gene IDs |
|---|---|---|---|---|---|---|---|
GO:0016491 | oxidoreductase activity | 666 | 47 | 1.54 | 1.72 | 0.0013 | ZTRI_1.1103, 1.153, 1.1625, 1.1653, 1.197, 1.2111, 1.218, 1.388, 1.391, 1.395, 1.494, 1.498, 1.542, 11.103, 12.262, 13.91, 2.1028, 2.632, 3.484, 3.534, 3.917, 4.167, 4.168, 4.169, 4.436, 4.462, 4.643, 4.646, 4.769, 5.122, 5.295, 5.347, 5.473, 5.646, 5.763, 6.437, 6.50, 6.645, 7.211, 7.373, 7.432, 7.458, 7.494, 8.259, 8.269, 8.435, 9.626 |
GO:0055114 | oxidation-reduction process | 600 | 42 | 7 | 1.53 | 0.0028 | ZTRI_1.1103, 1.153, 1.1653, 1.197, 1.218, 1.391, 1.395, 1.494, 1.498, 1.542, 10.487, 11.103, 12.262, 13.91, 2.1028, 2.632, 3.484, 3.534, 3.917, 4.167, 4.168, 4.169, 4.436, 4.462, 4.643, 4.646, 5.295, 5.347, 5.473, 5.646, 5.763, 6.437, 6.50, 6.645, 7.373, 7.432, 7.458, 7.494, 8.259, 8.269, 8.435, 9.626 |
GO:0051082 | unfolded protein binding | 20 | 5 | 5.46 | 7.08 | 0.0017 | ZTRI_4.535, 5.501, 5.654, 5.783, 8.716 |
GO:0031072 | heat shock protein binding | 4 | 2 | 10.93 | 21.02 | 0.0118 | ZTRI_ 5.501, 5.783 |
GO:0046906 | tetrapyrrole binding | 102 | 10 | 2.14 | 2.32 | 0.0176 | ZTRI_1.153, 1.864, 4.167, 5.122, 6.437, 7.432, 7.458, 8.259, 8.269, 9.626 |
GO:0020037 | heme binding | 102 | 10 | 2.14 | 2.32 | 0.0176 | ZTRI_1.153, 1.864, 4.167, 5.122, 6.437, 7.432, 7.458, 8.259, 8.269, 9.626 |
GO:0004806 | triglyceride lipase activity | 5 | 2 | 8.74 | 14.01 | 0.0190 | ZTRI_1.253, 1.6239 |
GO:0004857 | enzyme inhibitor activity | 5 | 2 | 8.74 | 14.01 | 0.0190 | ZTRI_12.381, 6.275 |
GO:0051087 | chaperone binding | 5 | 2 | 8.74 | 14.01 | 0.0190 | ZTRI_1.1194, 3.651 |
GO:0060590 | ATPase regulator activity | 5 | 2 | 8.74 | 14.01 | 0.0190 | ZTRI_1.1194, 3.651 |
GO:0006457 | protein folding | 26 | 8 | 30.8 | 6.73 | 0.0000 | ZTRI_1.1194, 4.535, 5.501, 5.654, 5.783, 8.689, 8.716, 9.277 |
GO:0046351 | disaccharide biosynthetic process | 3 | 2 | 66.7 | 14.57 | 0.0061 | ZTRI_6.64, 7.164 |
GO:0005992 | trehalose biosynthetic process | 3 | 2 | 66.7 | 14.57 | 0.0061 | ZTRI_6.64, 7.165 |
GO:0009312 | oligosaccharide biosynthetic process | 3 | 2 | 66.7 | 14.57 | 0.0061 | ZTRI_6.64, 7.166 |
GO:0005984 | disaccharide metabolic process | 5 | 2 | 40 | 8.74 | 0.0190 | ZTRI_6.64, 7.167 |
GO:0009311 | oligosaccharide metabolic process | 5 | 2 | 40 | 8.74 | 0.0190 | ZTRI_6.64, 7.168 |
GO:0005991 | trehalose metabolic process | 5 | 2 | 40 | 8.74 | 0.0190 | ZTRI_6.64, 7.169 |
GO:0006631 | y acid metabolic process | 13 | 3 | 23.1 | 5.04 | 0.0192 | ZTRI_12.262, 4.169, 4.769 |