Correlation | Pearson | https://CRAN.R-project.org/package=WGCNA | [69] |
Spearman | https://CRAN.R-project.org/package=WGCNA | [70] |
Kendall | https://CRAN.R-project.org/package=WGCNA | [71] |
Dcor | https://cran.r-project.org/package=energy | [32] |
RDC | https://bioconductor.org/packages/miRLAB | [72] |
Hoeffding | https://cran.r-project.org/package=Hmisc | [33] |
Z-score | https://bioconductor.org/packages/miRLAB | [73] |
Bcor | https://CRAN.R-project.org/package=WGCNA | [38] |
Wcor | https://github.com/skinnider/dismay | [74] |
Cosine | https://CRAN.R-project.org/package=philentropy | [75] |
Distance | Euclidean | https://CRAN.R-project.org/package=stats | [76] |
Manhattan | https://CRAN.R-project.org/package=stats | [77] |
Canberra | https://CRAN.R-project.org/package=stats | [40] |
Chebyshev | https://CRAN.R-project.org/package=stats | [42] |
Dice | https://CRAN.R-project.org/package=philentropy | [78] |
Jaccard | https://CRAN.R-project.org/package=philentropy | [79] |
Mahalanobise | https://CRAN.R-project.org/package=StatMatch | [80] |
Information | MI | https://cran.r-project.org/package=parmigene | [37] |
MIC | https://cran.r-project.org/package=minerva | [34] |
Regression | Lasso | https://cran.r-project.org/package=glmnet | [35] |
Elastic | https://cran.r-project.org/package=glmnet | [35] |
Ridge | https://cran.r-project.org/package=glmnet | [35] |
Bayesian | GenMiR++ | https://genes.toronto.edu/genmir | [39] |
Proportionality | Phit | https://cran.r-project.org/package=propr | [41] |
Phis | https://cran.r-project.org/package=propr | [41] |
Rhop | https://cran.r-project.org/package=propr | [41] |
Causality | IDA | https://cran.r-project.org/package=pcalg | [36] |
