Table 1 Summary of transcriptome sequencing and number of reads assigned to wheat and C. rosea

Raw reads (in million bp)^b

27.97

28.54

28.64

29.59

27.88

Clean reads (in million bp)^b

27.83

28.29

28.35

29.36

27.73

Reads unique to C. rosea^a

85.08

0.23

6.92

12.86

10.80

Reads assigned to C. rosea genes^a

73.10

NA

5.74

10.95

9.37

Unassigned C. rosea reads^a

11.12

NA

1.12

1.81

1.33

Reads not mapped to C. rosea^a

0.85

NA

0.06

0.10

0.09

Reads unique to wheat^a

0.55

85.44

76.10

70.36

74.02

Reads assigned to wheat genes^a

NA

69.51

57.23

54.37

58.71

Unassigned wheat reads^a

NA

13.39

11.54

10.01

10.32

Reads not mapped to wheat^a

NA

2.54

7.32

5.98

5.00