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Table 3 Determinants in cis of DE between COL and PIE. Average DMR frequency differences and non-CpG F ST in the 2 k upstream promoter region and throughout the gene body were compared between DE and non-DE genes using paired t-tests. The table displays p-values of those tests

From: Regulatory and evolutionary impact of DNA methylation in two songbird species and their naturally occurring F1 hybrids

Tissue

Promoter type

P DMR freq

GB DMR freq

P non-CpG Fst

GB non-CpG Fst

Brain

CGI

1

0.456 (-)

0.041 *

0 ***

Heart

CGI

0.023 *

0.039 *

0.1

0 ***

Kidney

CGI

0.006 *

1

1

0 ***

Liver

CGI

0.003 **

0 ***

0.125

0 ***

Testis

CGI

0.367

1 (-)

0.001 **

0 ***

Brain

Other

1 (-)

0.069

0.013 *

0 ***

Heart

Other

0.660

0.2

1

0 ***

Kidney

Other

0.171 (-)

0.023 *

1 (-)

0 ***

Liver

Other

0.020 (-)

1

1

0 ***

Testis

Other

1

1

0.456

0 ***

  1. (-) average value lower in DE genes, P Promoter, GB Gene body
  2. Family-wise (0.1) adjusted p-value levels: * < 0.05 ** < 0.005 *** < 0.0005