Fig. 6

Patterns of genetic and epigenetic change at differentially expressed genes between COL and PIE. DE genes had more DMRs in CGI promoters (A) but not in the Other promoters (C). DE genes also had higher non-CpG F _ST (B) across the gene bodies in all tissues and for both promoter types (B and D). Lines in plots represent loess curves and shaded regions around lines are the 95% confidence intervals. Differential expression was assessed at n = 8418 of the 8563 well-annotated genes. For each tissue, the sample size was n = 6, n = 5, and n = 3 for COL, PIE, and hybrids, respectively