Fig. 4

LTR retrotransposons in M. oryzae form eccDNAs through a variety of mechanisms. A–C Profile plots showing expected sequencing read coverage for each LTR retrotransposon eccDNA formation scenario as well as graphical representations of the scenario. In the graphics, blue and red rectangles represent hybrid LTRs formed from 5′ and 3′ LTRs during retrotransposition and green and orange lines represent areas of the internal region of the retrotransposon with distinct sequences. D–I Profile plots showing observed sequencing read coverage for each LTR retrotransposon found in the M. oryzae Guy11 genome