Fig. 3

The majority of eccDNAs in M. oryzae are made up of LTR retrotransposons. A Manhattan plot showing the number of junction split reads per million averaged across biological replicates for all 100 bp bins that overlap an LTR retrotransposon in the M. oryzae Guy11 genome. Each point represents one of these bins. B Boxplot showing the percentage of sequencing reads that map to LTR retrotransposons. Each point represents one sample, and the shape of the points represent the biological replicate that sample was taken from. C Boxplot showing the ratio of the percentage of sequencing reads that map to LTR retrotransposons to the percentage of the M. oryzae Guy11 genome that is made up by that retrotransposon. Each point represents one sample, and the shape of the points represent the biological replicate that sample was taken from